Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
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Documentation for package ‘kyotil’ version 2024.11-01
Help Pages
A B C D E F G H I K L M P Q R S T U V W Y misc
-- A --
| abline.pt.slope | Plotting Functions |
| abline.pts | Plotting Functions |
| abline.shade | Plotting Functions |
| abline.shade.2 | Plotting Functions |
| add.mtext.label | Plotting Functions |
| addRoc | ROC and AUC |
| age_calc | Age Calculation |
| AR1 | Matrix and Array Functions |
| array.functions | Matrix and Array Functions |
| as.binary | Math Functions |
| auc | AUC |
-- B --
| binary | Some Base Functions |
| binary2 | Some Base Functions |
| binaryloess | Using loess to Check Functional Form for Logistic Regression |
| binom.coef | Math Functions |
| butterfly.plot | Plotting Functions |
-- C --
| cbinduneven | Some Base Functions |
| classification.error | ROC and AUC |
| coef.auc | AUC |
| coef.Deming | Fit Deming regression. |
| coef.geese | Regression Model Functions |
| coef.tps | Regression Model Functions |
| computeRoc | ROC and AUC |
| concatList | Matrix and Array Functions |
| contain | String Functions |
| cor.mixed | Stat Functions |
| cor.mixed.default | Stat Functions |
| cor.mixed.formula | Stat Functions |
| cor.mixed.vector | Stat Functions |
| corplot | Plotting Functions |
| corplot.default | Plotting Functions |
| corplot.formula | Plotting Functions |
| cox.zph.2 | Test the Proportional Hazards Assumption of a Cox Regression (a slightly modified version) |
-- D --
| dbern | Random Functions |
| dcorbern | Random Functions |
| ddoublexp | Random Functions |
| dec_to_binary | Misc Functions |
| Deming | Fit Deming regression. |
| DMHeatMap | Better Heatmap Function |
| dmixnorm | Random Functions |
| dnorm.norm.gamma | Random Functions |
| DXD | Matrix Functions that May Be Faster than |
-- E --
| empty.plot | Plotting Functions |
| empty2na | Misc Functions |
| escapeUnderline | String Functions |
| EXCH | Matrix and Array Functions |
| expit | Math Functions |
-- F --
| f2c | Some Base Functions |
| fastauc | ROC and AUC |
| fileStem | String Functions |
| fill.jagged.array | Matrix and Array Functions |
| firstIndex | String Functions |
| formatDouble | Print Functions |
| formatInt | Print Functions |
| ftoi | Some Base Functions |
-- G --
| get.kfold.splits | Cross Validation Functions |
| get.sim.res | Read simulation results |
| get.splits | Cross Validation Functions |
| getExt | String Functions |
| getFileStem | String Functions |
| getFixedEf | Regression Model Functions |
| getFixedEf.coxph | Regression Model Functions |
| getFixedEf.Deming | Fit Deming regression. |
| getFixedEf.gam | Regression Model Functions |
| getFixedEf.gee | Regression Model Functions |
| getFixedEf.geese | Regression Model Functions |
| getFixedEf.glm | Regression Model Functions |
| getFixedEf.glmerMod | Regression Model Functions |
| getFixedEf.inla | Regression Model Functions |
| getFixedEf.lm | Regression Model Functions |
| getFixedEf.lme | Regression Model Functions |
| getFixedEf.lmerMod | Regression Model Functions |
| getFixedEf.logistf | Regression Model Functions |
| getFixedEf.matrix | Regression Model Functions |
| getFixedEf.mer | Regression Model Functions |
| getFixedEf.merMod | Regression Model Functions |
| getFixedEf.MIresult | Regression Model Functions |
| getFixedEf.svycoxph | Regression Model Functions |
| getFixedEf.svyglm | Regression Model Functions |
| getFixedEf.svy_vglm | Regression Model Functions |
| getFixedEf.tps | Regression Model Functions |
| getFixedEf2 | Regression Model Functions |
| getFormattedMCSummary | Read simulation results |
| getFormattedSummary | Regression Model Functions |
| getK | getK |
| getMfrow | Plotting Functions |
| getMidPoints | Matrix and Array Functions |
| getStem | String Functions |
| getUpperRight | Matrix and Array Functions |
| getVarComponent | Regression Model Functions |
| getVarComponent.glmerMod | Regression Model Functions |
| getVarComponent.hyperpar.inla | Regression Model Functions |
| getVarComponent.lmerMod | Regression Model Functions |
| getVarComponent.matrix | Regression Model Functions |
| getVarComponent.mer | Regression Model Functions |
| getVarComponent.merMod | Regression Model Functions |
| get_count_from_xy_coor | Imaging analysis for spatial region |
-- H --
| H | Stat Functions |
| hosmerlem | Testing Functions |
-- I --
| info.cor | Stat Functions |
| INT | Misc Functions |
| interaction.table | Regression Model Functions |
| interpolate | Math Functions |
| iorw | Causal Mediation Analysis of Cowling et al. |
-- K --
| kappacor | Stat Functions |
| keepWarnings | Some Base Functions |
| kfold.split | Cross Validation Functions |
| kid | Dataset from Cowling et al. |
| kyotil | kyotil |
-- L --
| l.measure | Stat Functions |
| last | Matrix and Array Functions |
| lastIndex | String Functions |
| logDiffExp | Math Functions |
| logit | Math Functions |
| logMeanExp | Math Functions |
| logSumExp | Math Functions |
| logSumExpFor2 | Math Functions |
| lpo.split | Cross Validation Functions |
-- M --
| make.latex.coef.table | Print Functions |
| make.timedep.dataset | Create Dataset for Time-dependent Covariate Proportional Hazard Model Analaysi |
| math.functions | Math Functions |
| matrix.array.functions | Matrix and Array Functions |
| matrix.functions | Matrix and Array Functions |
| MCsummary | Read simulation results |
| meanmed | Some Base Functions |
| mix | Matrix and Array Functions |
| multi.outer | Some Base Functions |
| mutual.info | Stat Functions |
| my.interaction.plot | Plotting Functions |
| myaggregate | Some Base Functions |
| myboxplot | Plotting Functions |
| myboxplot.data.frame | Plotting Functions |
| myboxplot.formula | Plotting Functions |
| myboxplot.list | Plotting Functions |
| mycor | Some Base Functions |
| mycor.test | Testing Functions |
| mydev.off | Plotting Functions |
| myfigure | Plotting Functions |
| myfisher.test | Testing Functions |
| myforestplot | Plotting Functions |
| myhist | Plotting Functions |
| mylegend | Plotting Functions |
| mylines | Plotting Functions |
| mymatplot | Plotting Functions |
| mypairs | Plotting Functions |
| mypdf | Plotting Functions |
| myplot | Plotting Functions |
| myplot.cox.zph | Vaccine Efficacy Plots |
| myplot.loess | Plotting Functions |
| mypng | Plotting Functions |
| mypostscript | Plotting Functions |
| myprint | Print Functions |
| myprint.default | Print Functions |
| myprint.matrix | Print Functions |
| myreshapelong | Some Base Functions |
| myreshapewide | Some Base Functions |
| mysanitize.numbers | Print Functions |
| mysanitize.text | Print Functions |
| mysapply | Some Base Functions |
| myscale | Some Base Functions |
| mysystem | Some Base Functions |
| mytable | Some Base Functions |
| mytapply | Some Base Functions |
| mytex | Print Functions |
| mytex.begin | Print Functions |
| mytex.end | Print Functions |
| mytiff | Plotting Functions |
| mywrite | Print Functions |
| mywrite.csv | Print Functions |
-- P --
| p.adj.perm | Permutation-based Multitesting P Values Adjustment |
| panel.cor | Plotting Functions |
| panel.hist | Plotting Functions |
| panel.nothing | Plotting Functions |
| pava | Misc Functions |
| pdoublexp | Random Functions |
| permn | Math Functions |
| plotRoc | ROC and AUC |
| predict.auc | AUC |
| predict.Deming | Fit Deming regression. |
| predict.geese | Regression Model Functions |
| predict.pcc | Misc Functions |
| predict.tps | Regression Model Functions |
| prettyprint | Print Functions |
| print.auc | AUC |
| print.iorw | Causal Mediation Analysis of Cowling et al. |
-- Q --
| qdoublexp | Random Functions |
| quick.t.test | Testing Functions |
-- R --
| ran.kfold.split | Cross Validation Functions |
| rank.inv.norm | Misc Functions |
| ratio | AUC |
| ratio.auc | AUC |
| ratio.glm | AUC |
| rbern | Random Functions |
| rbidoublexp | Random Functions |
| rbigamma | Random Functions |
| rbilogistic | Random Functions |
| rdoublexp | Random Functions |
| read.sv | Some Base Functions |
| read.tsv | Some Base Functions |
| rejective.sampling | Random Functions |
| remove.prefix | String Functions |
| rep.data.frame | Matrix and Array Functions |
| rep.matrix | Matrix and Array Functions |
| rep.matrix.block | Matrix and Array Functions |
| residuals.geese | Regression Model Functions |
| risk.cal | Regression Model Functions |
| rmixnorm | Random Functions |
| rnorm.ar | Random Functions |
| rnorm.norm.gamma | Random Functions |
| roundup | Print Functions |
-- S --
| sample.for.cv | Cross Validation Functions |
| shift.left | Matrix and Array Functions |
| shift.right | Matrix and Array Functions |
| signtest | Testing Functions |
| sim.dat.tvarying.three | Simulation Functions for Time-dependent Proportional Hazard Model |
| sim.dat.tvarying.two | Simulation Functions for Time-dependent Proportional Hazard Model |
| skew | Stat Functions |
| smoothed.scaled.hist | Plotting Functions |
| stat.functions | Stat Functions |
| Stirling2 | Math Functions |
| string.functions | String Functions |
| summ | Misc Functions |
| summary.auc | AUC |
| summary.Deming | Fit Deming regression. |
| symprod | Matrix Functions that May Be Faster than |
-- T --
| table.cases | Some Base Functions |
| table.cases.3 | Some Base Functions |
| table.prop | Some Base Functions |
| thin.rows | Matrix and Array Functions |
| ThinRows | Matrix and Array Functions |
| tr | Matrix and Array Functions |
| trainauc | AUC |
| trainauc.auc | AUC |
| trainauc.glm | AUC |
| trim | String Functions |
| tukey.mtest | Testing Functions |
| tXDX | Matrix Functions that May Be Faster than |
| txSy | Matrix Functions that May Be Faster than |
-- U --
| unix | Some Base Functions |
-- V --
| vcov.Deming | Fit Deming regression. |
| vcov.geese | Regression Model Functions |
| vcov.logistf | Regression Model Functions |
| vcov.tps | Regression Model Functions |
| vector.t.test | Testing Functions |
| VEplot | Vaccine Efficacy Plots |
| VEplot.cox.zph | Vaccine Efficacy Plots |
| VEplot.glm | Vaccine Efficacy Plots |
-- W --
| whiskers | Plotting Functions |
| wtd.hist | Plotting Functions |
-- Y --
| yule.y | Stat Functions |
-- misc --
| %.% | String Functions |
| .as.double | Matrix Functions that May Be Faster than |